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Mouse prefrontal cortex
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Mouse prefrontal cortex Gao et al, 2022
Mouse Hippocampus Qiu et al. 2024
Mouse CeA Dou et al. 2024
Mouse PVH OXT Humingzhu Li et al. 2024
Mouse Hypothalamus Jiao et al. 2025
Mouse LHA Ji et al, 2025
None
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Gao et al.,2022
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Gao et al.,2023
L2 horizontal acute angleL2 horizontal multipolarL2 horizontal obtuse angleL2 horizontal pyramidal-likeL3 vertical multipolarL3 vertical three main dendritesL3 vertical two main dendritesL4 spiny stellateL6 bipolarL6 horizontalL6 invertedL6 multipolarL6 tangentialRare typesTypical Py-1Typical Py-10Typical Py-11Typical Py-12Typical Py-13Typical Py-14Typical Py-15Typical Py-16Typical Py-17Typical Py-18Typical Py-19Typical Py-2Typical Py-20Typical Py-21Typical Py-22Typical Py-23Typical Py-24Typical Py-3Typical Py-4Typical Py-5Typical Py-6Typical Py-7Typical Py-8Typical Py-9
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Structure
Reconstruction Type Axon and dentrite Axon only
Anatomical Regionlocates inprojects to
Soma HemisphereLeftRight
Soma
AxonSoma
ROOTroot
Axon
AxonSoma
ROOTroot
Mouse LineC57
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ID
Neuron ID
Neuron IDSample ID
Query result:6357|Selected:6357
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Filter
ROOTroot
GREYBasic cell groups and regions
BSBrain stem
CHCerebrum
CBCerebellum
FIBERTRACTSfiber tracts
EPSextrapyramidal fiber systems
CMcranial nerves
MFBSmedial forebrain bundle system
LFBSlateral forebrain bundle system
CBFcerebellum related fiber tracts
SCWMsupra-callosal cerebral white matter
VSventricular systems
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Coloring Scheme
Region
Neuron
Dendrite
Soma
Axon
Reference
Sagittal Bregma(mm):5.70
Horizontal Bregma(mm):4.00
Coronal Bregma(mm):6.60
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000000
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Items in the scene
Neurons Regions
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Sample Information
Injection structure:Mouse line:Gender:Injection age:Injection coordinates:Injection virus:Virus expression time:Injection volume:
Neuron Info
Sample ID
Neuron ID
Soma Hemisphere
Soma Brain Area
Projection Area
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Processing: 0/1 0%
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Neuron:
Soma brain area:
x: 0.0
y: 0.0
z: 0.0
Region: x: 0.0y: 0.0z: 0.0
Analyzing
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Welcome!
You may filter some neurons and click the analyze button on the left side of the page to view results .
ExamplesYou may filter some neurons and click the analyze button on the left side of the page to view results .
Soma Distribution
Projection Overview
Projection heatmap
(by axon length)
(by axon length)
Projection heatmap
(by terminal points)
(by terminal points)
Data:Analyzing: Soma distribution
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Neuron Summation
StructureSoma Count (pcs)Density (pcs/µm³)
Data:Analyzing: Projection heatmap (axon length)
Statistics by Neuron Brain area
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NaN
NaN
We selected the top 30 brain regions based on the distribution of axon length for projection analysis.
Data:Analyzing: Projection heatmap (terminal points)
Statistics by Neuron Brain area
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NaN
NaN
We selected the top 30 brain regions based on the distribution of terminal count for projection analysis.
Data:Analyzing: Projection Overview
Statistics by Projection length Neuron number
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StructureLeft Hemisphere(μm)Right Hemisphere(μm)
GREY Basic cell groups and regions
0.00
0.00
FIBER TRACTS fiber tracts
0.00
0.00
VS ventricular systems
0.00
0.00
GREY Basic cell groups and regions
0
FIBER TRACTS fiber tracts
0
VS ventricular systems
0
Welcome!
You may filter some neurons and click the analyze button on the left side of the page to view results .
ExamplesYou may filter some neurons and click the analyze button on the left side of the page to view results .
Soma Distribution
Projection Overview
Projection heatmap
(by axon length)
(by axon length)
Projection heatmap
(by terminal points)
(by terminal points)
Data:Analyzing: Soma distribution
Download this data
Neuron Summation
StructureSoma Count (pcs)Density (pcs/µm³)
Data:Analyzing: Projection heatmap (axon length)
Statistics by Neuron Brain area
Download this data
NaN
NaN
We selected the top 30 brain regions based on the distribution of axon length for projection analysis.
Data:Analyzing: Projection heatmap (terminal points)
Statistics by Neuron Brain area
Download this data
NaN
NaN
We selected the top 30 brain regions based on the distribution of terminal count for projection analysis.
Data:Analyzing: Projection Overview
Statistics by Projection length Neuron number
Download this data as JSON
StructureLeft Hemisphere(μm)Right Hemisphere(μm)
GREY Basic cell groups and regions
0.00
0.00
FIBER TRACTS fiber tracts
0.00
0.00
VS ventricular systems
0.00
0.00
GREY Basic cell groups and regions
0
FIBER TRACTS fiber tracts
0
VS ventricular systems
0
Analyzing